PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_19523g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 249aa    MW: 27728.4 Da    PI: 8.4688
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_19523g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC158.88.4e-50631635102
          NF-YC   5 fwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                     w++q   ie+a df+nh+lPlarikki+k+de+vkmisaeaPv+++kace+fi eltlr+w+h+ee+krrtl+k+diaaa+trtdifdfl+di p
  MA_19523g0010  63 SWANQmqgIEQAVDFRNHSLPLARIKKIMKSDEHVKMISAEAPVVFAKACEMFINELTLRAWNHTEETKRRTLQKNDIAAAITRTDIFDFLIDILP 158
                    6998877789************************************************************************************** PP

          NF-YC  98 rdelk 102
                    rdelk
  MA_19523g0010 159 RDELK 163
                    **875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.54E-3165153IPR009072Histone-fold
PfamPF008081.4E-2281144IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.7E-3782159IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MPIQYYGATP YQTAQILPSI AHGTFQQPLI SSNAHAAPAL PLSAHLNQLA YHHQKHQGKV  60
EISWANQMQG IEQAVDFRNH SLPLARIKKI MKSDEHVKMI SAEAPVVFAK ACEMFINELT  120
LRAWNHTEET KRRTLQKNDI AAAITRTDIF DFLIDILPRD ELKEDQVITL GTPSSSLSVG  180
GSSSNAGVAN SFPYYYLPNQ HSAPHGVTVG NPMHPAIYMQ QPRSPAAYMQ NMLQRGHMHT  240
DQSRSHNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B1e-40761591194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C1e-40761591194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022075.13e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_011022077.13e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9ZVL31e-62NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLA9NTJ81e-115A9NTJ8_PICSI; Putative uncharacterized protein
STRINGPOPTR_0005s09770.11e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-59nuclear factor Y, subunit C2